IL_5AKA_123

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGGGAAGGCCCAGACAGC*GUCGAGUCGGCCUG

Length

32 nucleotides

Bulged bases

5AKA|1|B|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AKA|1|B|U|1035
5AKA|1|B|G|1036
5AKA|1|B|G|1037
5AKA|1|B|G|1038
5AKA|1|B|A|1039
5AKA|1|B|A|1040
5AKA|1|B|G|1041
5AKA|1|B|G|1042
5AKA|1|B|C|1043
5AKA|1|B|C|1044
5AKA|1|B|C|1045
5AKA|1|B|A|1046
5AKA|1|B|G|1047
5AKA|1|B|A|1048
5AKA|1|B|C|1049
5AKA|1|B|A|1050
5AKA|1|B|G|1051
5AKA|1|B|C|1052
*
5AKA|1|B|G|1107
5AKA|1|B|U|1108
5AKA|1|B|C|1109
5AKA|1|B|G|1110
5AKA|1|B|A|1111
5AKA|1|B|G|1112
5AKA|1|B|U|1113
5AKA|1|B|C|1114
5AKA|1|B|G|1115
5AKA|1|B|G|1116
5AKA|1|B|C|1117
5AKA|1|B|C|1118
5AKA|1|B|U|1119
5AKA|1|B|G|1120

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain G

50S RIBOSOMAL PROTEIN L6

Chain M

50S RIBOSOMAL PROTEIN L16

Chain V

50S RIBOSOMAL PROTEIN L25