IL_5AKA_124

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGAU*AUUUAAAGAAAGCGUAAUAGCUCAC

Length

29 nucleotides

Bulged bases

5AKA|1|B|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AKA|1|B|G|1055
5AKA|1|B|G|1056
5AKA|1|B|A|1057
5AKA|1|B|U|1058
*
5AKA|1|B|A|1080
5AKA|1|B|U|1081
5AKA|1|B|U|1082
5AKA|1|B|U|1083
5AKA|1|B|A|1084
5AKA|1|B|A|1085
5AKA|1|B|A|1086
5AKA|1|B|G|1087
5AKA|1|B|A|1088
5AKA|1|B|A|1089
5AKA|1|B|A|1090
5AKA|1|B|G|1091
5AKA|1|B|C|1092
5AKA|1|B|G|1093
5AKA|1|B|U|1094
5AKA|1|B|A|1095
5AKA|1|B|A|1096
5AKA|1|B|U|1097
5AKA|1|B|A|1098
5AKA|1|B|G|1099
5AKA|1|B|C|1100
5AKA|1|B|U|1101
5AKA|1|B|C|1102
5AKA|1|B|A|1103
5AKA|1|B|C|1104

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain G

50S RIBOSOMAL PROTEIN L6

Chain I

50S RIBOSOMAL PROTEIN L11