3D structure

PDB id
5AN9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mechanism of eIF6 release from the nascent 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
AUUA*UUCU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5AN9_001 not in the Motif Atlas
Homologous match to IL_5TBW_041
Geometric discrepancy: 0.1591
The information below is about IL_5TBW_041
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_36174.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
15

Unit IDs

5AN9|1|N|A|1221
5AN9|1|N|U|1222
5AN9|1|N|U|1223
5AN9|1|N|A|1224
*
5AN9|1|N|U|1256
5AN9|1|N|U|1257
5AN9|1|N|C|1258
5AN9|1|N|U|1259

Current chains

Chain N
26S RIBOSOMAL RNA

Nearby chains

Chain F
60S RIBOSOMAL PROTEIN L10

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1492 s
Application loaded.