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5AN9 Hairpin, Internal, and multi-helix Junction Loop Motifs

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Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5AN9_0011/N/1238:1244No text annotation
HL_5AN9_0021/N/1363:1369GNRA
homologous
HL_8C3A_025
NA
HL_5AN9_0031/N/1385:1392No text annotation
homologous
HL_5TBW_026
NA
HL_5AN9_0041/N/1474:1484No text annotation
homologous
HL_8C3A_027
NA
HL_5AN9_0051/N/1502:1509GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_5AN9_0061/N/1583:1595No text annotation
HL_5AN9_0071/N/2402:2412No text annotation
homologous
HL_8C3A_046
NA
HL_5AN9_0081/N/2431:2436GNRA
homologous
HL_8C3A_047
NA
HL_5AN9_0091/N/2486:2491GNRA
homologous
HL_8C3A_048
NA
HL_5AN9_0101/N/2519:2529No text annotation
HL_5AN9_0111/N/2558:2566No text annotation
homologous
HL_5TBW_050
NA
HL_5AN9_0121/N/2635:2644No text annotation
homologous
HL_8C3A_051
NA
HL_5AN9_0141/N/2949:2957No text annotation
homologous
HL_5TBW_054
NA
HL_5AN9_0151/N/2966:2978No text annotation
homologous
HL_5TBW_055
NA
HL_5AN9_0281/N/3006:3014No text annotation
homologous
HL_8P9A_167
HL_50860.2
HL_5AN9_0171/N/3026:3033Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_5AN9_0181/N/3056:3066tRNA anticodon loop
geometric
HL_6UGG_005
HL_83632.1
HL_5AN9_0191/N/3077:3082GNRA
homologous
HL_8C3A_060
NA
HL_5AN9_0201/N/3109:3117Pseudoknot geometry
homologous
HL_5TBW_060
NA
HL_5AN9_0211/N/3173:3181No text annotation
homologous
HL_8C3A_062
NA
HL_5AN9_0221/N/3230:3237No text annotation
homologous
HL_5TBW_062
NA
HL_5AN9_0231/N/3253:3259No text annotation
geometric
HL_5TBW_063
NA
HL_5AN9_0241/N/3296:3301GNRA
homologous
HL_5TBW_064
NA
HL_5AN9_0251/N/3361:3366GNRA
geometric
HL_2OIU_001
HL_37824.7
HL_5AN9_0261/N/3404:3409Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_5AN9_0271/N/3446:3460No text annotation
homologous
HL_8C3A_068
NA

Problematic loops

#loop idProblemSequence
HL_5AN9_013No text annotation
HL_5AN9_016No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5AN9_0011/N/1221:1224,
1/N/1256:1259		Tandem non-canonical cWW pairs
homologous
IL_5TBW_041
NA
IL_5AN9_0021/N/1224:1226,
1/N/1254:1256		Isolated non-canonical cWW pair
geometric
IL_3DIL_006
IL_87907.2
IL_5AN9_0561/N/1229:1233,
1/N/1249:1251		No text annotation
homologous
IL_8CRE_477
IL_31737.3
IL_5AN9_0051/N/1357:1359,
1/N/1373:1375		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_5AN9_0071/N/1403:1408,
1/N/1564:1569		UAA/GAN with extra cWW
geometric
IL_4WF9_104
IL_49767.8
IL_5AN9_0081/N/1410:1417,
1/N/1561:1562		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_5AN9_0091/N/1423:1429,
1/N/1549:1555		No text annotation
homologous
IL_8C3A_054
NA
IL_5AN9_0101/N/1429:1440,
1/N/1534:1549		No text annotation
geometric
IL_5TBW_052
NA
IL_5AN9_0111/N/1442:1444,
1/N/1531:1532		Single bulged U
homologous
IL_5TBW_053
NA
IL_5AN9_0121/N/1453:1461,
1/N/1518:1522		Kink-turn
homologous
IL_5TBW_054
NA
IL_5AN9_0531/N/1469:1472,
1/N/1486:1489		No text annotation
geometric
IL_5J7L_285
IL_92446.2
IL_5AN9_0141/N/1497:1501,
1/N/1510:1512		Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_5AN9_0151/N/2395:2396,
1/N/2589:2591		Single bulged A
homologous
IL_5TBW_082
NA
IL_5AN9_0161/N/2423:2429,
1/N/2438:2446		Kink-turn related
geometric
IL_4V9F_065
IL_17069.5
IL_5AN9_0171/N/2462:2465,
1/N/2511:2512		Major groove intercalation
homologous
IL_5TBW_084
NA
IL_5AN9_0181/N/2466:2467,
1/N/2507:2510		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_5AN9_0191/N/2470:2472,
1/N/2503:2504		Single bulged U
geometric
IL_4WF9_088
IL_89505.4
IL_5AN9_0541/N/2472:2476,
1/N/2501:2503		No text annotation
homologous
IL_8P9A_315
IL_36516.3
IL_5AN9_0551/N/2476:2483,
1/N/2494:2501		No text annotation
IL_5AN9_0211/N/2542:2543,
1/N/2573:2576		No text annotation
homologous
IL_8C3A_094
NA
IL_5AN9_0221/N/2543:2554,
1/N/2570:2573		No text annotation
geometric
IL_5TBW_090
NA
IL_5AN9_0231/N/2657:2660,
1/N/3319:3321		No text annotation
homologous
IL_8C3A_096
NA
IL_5AN9_0241/N/2662:2664,
1/N/3314:3317		No text annotation
homologous
IL_8C3A_097
NA
IL_5AN9_0251/N/2675:2677,
1/N/3144:3145		Single bulged U
homologous
IL_5TBW_093
NA
IL_5AN9_0261/N/2678:2679,
1/N/3140:3143		Minor groove platform
homologous
IL_5TBW_094
NA
IL_5AN9_0271/N/2689:2691,
1/N/2937:2940		Isolated tHS basepair with bulges
homologous
IL_5TBW_095
NA
IL_5AN9_0281/N/2696:2698,
1/N/2930:2932		Isolated non-canonical cWW pair
geometric
IL_4Y1M_005
IL_07785.1
IL_5AN9_0291/N/2947:2948,
1/N/2958:2960		Single bulged A
homologous
IL_8C3A_107
NA
IL_5AN9_0301/N/2999:3001,
1/N/3019:3023		Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_5AN9_0311/N/3047:3049,
1/N/3073:3074		Single bulged A
geometric
IL_5TBW_013
NA
IL_5AN9_0321/N/3102:3104,
1/N/3121:3122		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_5AN9_0331/N/3104:3106,
1/N/3120:3121		Single bulged U
geometric
IL_3D2V_001
IL_89505.4
IL_5AN9_0341/N/3106:3108,
1/N/3118:3120		Isolated non-canonical cWW pair
geometric
IL_3GM7_005
IL_87907.2
IL_5AN9_0351/N/3156:3157,
1/N/3198:3200		Major groove platform
geometric
IL_5TBW_102
NA
IL_5AN9_0361/N/3157:3159,
1/N/3196:3198		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_5AN9_0371/N/3159:3161,
1/N/3195:3196		Major groove platform
geometric
IL_5TBW_104
NA
IL_5AN9_0381/N/3161:3163,
1/N/3191:3195		Major groove minor groove platform with extra cWW
geometric
IL_4V9F_084
IL_51387.2
IL_5AN9_0391/N/3168:3172,
1/N/3182:3186		No text annotation
homologous
IL_8C3A_114
NA
IL_5AN9_0401/N/3209:3210,
1/N/3282:3284		Major groove platform
homologous
IL_5TBW_107
NA
IL_5AN9_0411/N/3212:3214,
1/N/3276:3280		Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_5AN9_0421/N/3214:3215,
1/N/3273:3276		Multiple bulged bases
homologous
IL_5TBW_109
NA
IL_5AN9_0431/N/3224:3225,
1/N/3242:3245		Major groove platform with intercalation
homologous
IL_5TBW_111
NA
IL_5AN9_0441/N/3251:3253,
1/N/3259:3261		Isolated non-canonical cWW pair
homologous
IL_5TBW_112
NA
IL_5AN9_0451/N/3293:3294,
1/N/3303:3305		Single bulged A
homologous
IL_5TBW_113
NA
IL_5AN9_0461/N/3340:3343,
1/N/3475:3479		Double sheared
homologous
IL_8C3A_123
NA
IL_5AN9_0471/N/3354:3361,
1/N/3366:3372		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_5AN9_0481/N/3383:3387,
1/N/3427:3430		Major groove minor groove platform with tHH
homologous
IL_5TBW_117
NA
IL_5AN9_0491/N/3390:3395,
1/N/3420:3424		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_5AN9_0501/N/3399:3400,
1/N/3413:3416		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_5AN9_0511/N/3439:3443,
1/N/3463:3467		UAA/GAN
homologous
IL_8C3A_129
NA

Problematic loops

#loop idProblemSequence
IL_5AN9_052No text annotation
IL_5AN9_003No text annotation
IL_5AN9_004Isolated cWH basepair
IL_5AN9_006No text annotation
IL_5AN9_013No text annotation
IL_5AN9_020No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5AN9_0011/N/1465:1467,
1/N/1491:1497,
1/N/1512:1514		No text annotation
homologous
J3_5TBW_007
NA
J3_5AN9_0041/N/2984:2986,
1/N/3087:3098,
1/N/3126:3131		No text annotation
homologous
J3_8C3A_056
NA
J3_5AN9_0021/N/2997:2999,
1/N/3023:3025,
1/N/3034:3039		No text annotation
homologous
J3_5TBW_013
NA
J3_5AN9_0031/N/3219:3222,
1/N/3247:3249,
1/N/3263:3269		No text annotation
homologous
J3_5TBW_014
NA
J4_5AN9_0011/N/2397:2401,
1/N/2413:2417,
1/N/2452:2456,
1/N/2583:2588		No text annotation
homologous
J4_8C3A_006
NA
J4_5AN9_0021/N/2458:2460,
1/N/2514:2515,
1/N/2533:2542,
1/N/2576:2581		No text annotation
homologous
J4_8P9A_018
J4_93343.1
J4_5AN9_0031/N/2987:2991,
1/N/3045:3047,
1/N/3074:3075,
1/N/3084:3086		No text annotation
J4_5AN9_0041/N/3345:3348,
1/N/3378:3379,
1/N/3434:3436,
1/N/3470:3473		No text annotation
J5_5AN9_0011/N/2665:2672,
1/N/3148:3156,
1/N/3200:3208,
1/N/3285:3290,
1/N/3308:3313		No text annotation
J5_5AN9_0021/N/2682:2685,
1/N/2944:2947,
1/N/2960:2961,
1/N/2983:2984,
1/N/3131:3137		No text annotation
homologous
J5_8C3A_006
NA
J6_5AN9_0011/N/2682:2685,
1/N/2944:2947,
1/N/2960:2961,
1/N/2983:2986,
1/N/3087:3098,
1/N/3126:3137		No text annotation

Problematic loops

No problematic loops


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