IL_5AOX_003

3D structure

PDB id

5AOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human Alu RNA retrotransposition complex in the ribosome-stalling conformation

Experimental method

X-RAY DIFFRACTION

Resolution

2.04 Å

Loop

Sequence

GGAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5AOX|1|C|G|58
5AOX|1|C|G|59
5AOX|1|C|A|60
5AOX|1|C|U|61
*
5AOX|1|C|A|105
5AOX|1|C|G|106
5AOX|1|C|A|107
5AOX|1|C|C|108

Current chains

Chain C

ALU JO CONSENSUS RNA

Nearby chains

Chain A

SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN

Chain B

SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN

Chain F

ALU JO CONSENSUS RNA