IL_5APN_038

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

5APN|1|5|U|981, 5APN|1|5|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5APN|1|5|C|977
5APN|1|5|G|978
5APN|1|5|U|979
5APN|1|5|A|980
5APN|1|5|U|981
5APN|1|5|C|982
*
5APN|1|5|G|1101
5APN|1|5|A|1102
5APN|1|5|A|1103
5APN|1|5|G|1104

Current chains

Chain 5

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L7-A

Chain Q

60S ribosomal protein L18-A

Chain b

60S ribosomal protein L29