IL_5APN_055

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

5APN|1|5|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5APN_055 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3845

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5APN|1|5|G|1234
5APN|1|5|U|1235
5APN|1|5|G|1236
5APN|1|5|G|1237
5APN|1|5|C|1238
*
5APN|1|5|G|1250
5APN|1|5|A|1251
5APN|1|5|A|1252
5APN|1|5|U|1253
5APN|1|5|C|1254

Current chains

Chain 5

25S rRNA

Nearby chains