IL_5APN_056

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5APN|1|5|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5APN_056 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.2233

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5APN|1|5|G|1262
5APN|1|5|A|1263
5APN|1|5|G|1264
5APN|1|5|U|1265
5APN|1|5|G|1266
*
5APN|1|5|C|1275
5APN|1|5|U|1276
5APN|1|5|C|1277

Current chains

Chain 5

25S rRNA

Nearby chains