3D structure

PDB id
5APN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.91 Å

Loop

Sequence
UGACGAAG*UCGAA
Length
13 nucleotides
Bulged bases
5APN|1|5|C|1391
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5APN_059 not in the Motif Atlas
Homologous match to IL_5TBW_059
Geometric discrepancy: 0.1203
The information below is about IL_5TBW_059
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.5
Basepair signature
cWW-cWW-tSS-tSH-tHS-cWW-tHS
Number of instances in this motif group
32

Unit IDs

5APN|1|5|U|1388
5APN|1|5|G|1389
5APN|1|5|A|1390
5APN|1|5|C|1391
5APN|1|5|G|1392
5APN|1|5|A|1393
5APN|1|5|A|1394
5APN|1|5|G|1395
*
5APN|1|5|U|1415
5APN|1|5|C|1416
5APN|1|5|G|1417
5APN|1|5|A|1418
5APN|1|5|A|1419

Current chains

Chain 5
25S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain C
60S ribosomal protein L4-A
Chain E
60S ribosomal protein L6-A
Chain P
60S ribosomal protein L17-A
Chain Y
60S ribosomal protein L26-A
Chain e
60S ribosomal protein L32
Chain z
ALB1

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