IL_5APN_072

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GUC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5APN_072 not in the Motif Atlas

Geometric match to IL_1YZ9_002

Geometric discrepancy: 0.1895

The information below is about IL_1YZ9_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5APN|1|5|G|1658
5APN|1|5|U|1659
5APN|1|5|C|1660
*
5APN|1|5|G|1789
5APN|1|5|G|1790
5APN|1|5|C|1791

Current chains

Chain 5

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain g

60S ribosomal protein L34-A

Chain p

60S ribosomal protein L43-A