3D structure

PDB id
5APN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.91 Å

Loop

Sequence
CCAG*CG
Length
6 nucleotides
Bulged bases
5APN|1|5|C|2197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5APN_088 not in the Motif Atlas
Homologous match to IL_8C3A_089
Geometric discrepancy: 0.1038
The information below is about IL_8C3A_089
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_88739.5
Basepair signature
cWW-L-cWW
Number of instances in this motif group
12

Unit IDs

5APN|1|5|C|2196
5APN|1|5|C|2197
5APN|1|5|A|2198
5APN|1|5|G|2199
*
5APN|1|5|C|2245
5APN|1|5|G|2246

Current chains

Chain 5
25S rRNA

Nearby chains

Chain A
60S ribosomal protein L2-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.113 s