IL_5APN_093

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

AUC*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUC,GAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5APN_093 not in the Motif Atlas

Geometric match to IL_5TBW_047

Geometric discrepancy: 0.2175

The information below is about IL_5TBW_047

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5APN|1|5|A|2387
5APN|1|5|U|2388
5APN|1|5|C|2389
*
5APN|1|5|G|2990
5APN|1|5|A|2991
5APN|1|5|U|2992

Current chains

Chain 5

25S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A