IL_5APN_098

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GAG*UUAC

Length

7 nucleotides

Bulged bases

5APN|1|5|A|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5APN_098 not in the Motif Atlas

Geometric match to IL_7A0S_041

Geometric discrepancy: 0.2782

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

5APN|1|5|G|2412
5APN|1|5|A|2413
5APN|1|5|G|2414
*
5APN|1|5|U|2806
5APN|1|5|U|2807
5APN|1|5|A|2808
5APN|1|5|C|2809

Current chains

Chain 5

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L2-A