IL_5APN_109
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- UGA*UACA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APN_109 not in the Motif Atlas
- Geometric match to IL_4V9F_053
- Geometric discrepancy: 0.3614
- The information below is about IL_4V9F_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09990.4
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5APN|1|5|U|2719
5APN|1|5|G|2720
5APN|1|5|A|2721
*
5APN|1|5|U|2735
5APN|1|5|A|2736
5APN|1|5|C|2737
5APN|1|5|A|2738
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain b
- 60S ribosomal protein L29
- Chain o
- 60S ribosomal protein L42-A
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