IL_5APN_116

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5APN_116 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1054

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5APN|1|5|U|2835
5APN|1|5|C|2836
5APN|1|5|A|2837
5APN|1|5|A|2838
5APN|1|5|G|2839
*
5APN|1|5|C|2849
5APN|1|5|G|2850
5APN|1|5|A|2851
5APN|1|5|C|2852
5APN|1|5|A|2853

Current chains

Chain 5

25S rRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain m

Ubiquitin-60S ribosomal protein L40