IL_5APN_145

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

5APN|1|5|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5APN_145 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.2292

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5APN|1|5|G|3340
5APN|1|5|U|3341
5APN|1|5|A|3342
*
5APN|1|5|U|3363
5APN|1|5|C|3364

Current chains

Chain 5

25S rRNA

Nearby chains

Chain W

60S ribosomal protein L24-A

Chain y

Cytoplasmic 60S subunit biogenesis factor REI1