IL_5APN_163

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5APN_163 not in the Motif Atlas

Homologous match to IL_8P9A_315

Geometric discrepancy: 0.3146

The information below is about IL_8P9A_315

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

5APN|1|5|G|2206
5APN|1|5|A|2207
5APN|1|5|A|2208
5APN|1|5|U|2209
5APN|1|5|G|2210
*
5APN|1|5|C|2235
5APN|1|5|G|2236
5APN|1|5|C|2237

Current chains

Chain 5

25S rRNA

Nearby chains