IL_5APN_171
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APN_171 not in the Motif Atlas
- Homologous match to IL_8P9A_244
- Geometric discrepancy: 0.108
- The information below is about IL_8P9A_244
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5APN|1|5|G|404
5APN|1|5|U|405
5APN|1|5|G|406
5APN|1|5|A|407
5APN|1|5|A|408
5APN|1|5|A|409
5APN|1|5|U|410
*
5APN|1|8|A|13
5APN|1|8|C|14
5APN|1|8|G|15
5APN|1|8|G|16
5APN|1|8|A|17
5APN|1|8|U|18
5APN|1|8|C|19
Current chains
- Chain 5
- 25S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain e
- 60S ribosomal protein L32
- Chain y
- Cytoplasmic 60S subunit biogenesis factor REI1
Coloring options: