IL_5APO_031
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APO_031 not in the Motif Atlas
- Homologous match to IL_5TBW_030
- Geometric discrepancy: 0.1067
- The information below is about IL_5TBW_030
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
5APO|1|5|U|834||||P_1
5APO|1|5|G|835||||P_1
5APO|1|5|A|836||||P_1
5APO|1|5|A|837||||P_1
5APO|1|5|G|838||||P_1
*
5APO|1|5|U|855||||P_1
5APO|1|5|G|856||||P_1
5APO|1|5|G|857||||P_1
5APO|1|5|A|858||||P_1
5APO|1|5|G|859||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain R
- 60S ribosomal protein L19-A
- Chain p
- 60S ribosomal protein L43-A
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