IL_5APO_041
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 5APO|1|5|G|1001||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APO_041 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.1054
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
5APO|1|5|G|999||||P_1
5APO|1|5|C|1000||||P_1
5APO|1|5|G|1001||||P_1
5APO|1|5|A|1002||||P_1
5APO|1|5|A|1003||||P_1
5APO|1|5|U|1004||||P_1
*
5APO|1|5|A|1046||||P_1
5APO|1|5|A|1047||||P_1
5APO|1|5|A|1048||||P_1
5APO|1|5|C|1049||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 60S ribosomal protein L5
- Chain I
- 60S ribosomal protein L10
- Chain T
- 60S ribosomal protein L21-A
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