IL_8C3A_043

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGAAU*AAAC

Length

10 nucleotides

Bulged bases

8C3A|1|1|G|997

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_02509.3

Basepair signature

cWW-cWS-cWW-cWW-R-cSH-tWH-R

Number of instances in this motif group

6

Unit IDs

8C3A|1|1|G|995
8C3A|1|1|C|996
8C3A|1|1|G|997
8C3A|1|1|A|998
8C3A|1|1|A|999
8C3A|1|1|U|1000
*
8C3A|1|1|A|1042
8C3A|1|1|A|1043
8C3A|1|1|A|1044
8C3A|1|1|C|1045

Current chains

Chain 1

25S

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain 3

5S ribosomal RNA; 5S rRNA

Chain m

Uncharacterized protein CaJ7.0206

Chain r

60S ribosomal protein L10