IL_5APO_129
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 5APO|1|5|A|3180||||P_1, 5APO|1|5|A|3186||||P_1, 5APO|1|5|U|3207||||P_1, 5APO|1|5|A|3209||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APO_129 not in the Motif Atlas
- Geometric match to IL_5TBW_124
- Geometric discrepancy: 0.0782
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5APO|1|5|U|3179||||P_1
5APO|1|5|A|3180||||P_1
5APO|1|5|C|3181||||P_1
5APO|1|5|G|3182||||P_1
5APO|1|5|A|3183||||P_1
5APO|1|5|A|3184||||P_1
5APO|1|5|U|3185||||P_1
5APO|1|5|A|3186||||P_1
5APO|1|5|A|3187||||P_1
5APO|1|5|G|3188||||P_1
*
5APO|1|5|C|3204||||P_1
5APO|1|5|G|3205||||P_1
5APO|1|5|C|3206||||P_1
5APO|1|5|U|3207||||P_1
5APO|1|5|G|3208||||P_1
5APO|1|5|A|3209||||P_1
5APO|1|5|A|3210||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain E
- 60S RIBOSOMAL PROTEIN EL6
- Chain H
- 60S ribosomal protein L9-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain S
- 60S ribosomal protein L20-A
- Chain f
- 60S ribosomal protein L33-A
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