IL_5APO_160
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APO_160 not in the Motif Atlas
- Homologous match to IL_8C3A_486
- Geometric discrepancy: 0.1006
- The information below is about IL_8C3A_486
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28976.1
- Basepair signature
- cWW-L-cWW-cSH-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5APO|1|5|C|2889||||P_1
5APO|1|5|A|2890||||P_1
5APO|1|5|U|2891||||P_1
5APO|1|5|A|2892||||P_1
*
5APO|1|5|U|2909||||P_1
5APO|1|5|A|2910||||P_1
5APO|1|5|A|2911||||P_1
5APO|1|5|G|2912||||P_1
5APO|1|5|C|2913||||P_1
5APO|1|5|G|2914||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain O
- 60S ribosomal protein L16-A
- Chain V
- 60S ribosomal protein L23-A
- Chain m
- Ubiquitin-60S ribosomal protein L40
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