IL_5BR8_020

3D structure

PDB id

5BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient-temperature crystal structure of 30S ribosomal subunit from Thermus thermophilus in complex with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5BR8_020 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0739

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5BR8|1|A|C|504
5BR8|1|A|G|505
5BR8|1|A|G|506
5BR8|1|A|C|507
5BR8|1|A|C|508
5BR8|1|A|A|509
5BR8|1|A|A|510
5BR8|1|A|C|511
*
5BR8|1|A|G|540
5BR8|1|A|G|541

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain E

30S ribosomal protein S5

Chain L

30S ribosomal protein S12