IL_5BTP_005

3D structure

PDB id

5BTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusobacterium ulcerans ZTP riboswitch bound to ZMP

Experimental method

X-RAY DIFFRACTION

Resolution

2.82 Å

Loop

Sequence

CUGACGGAACG*CAUG

Length

15 nucleotides

Bulged bases

5BTP|1|B|A|22, 5BTP|1|B|A|23, 5BTP|1|B|C|24

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69271.3

Basepair signature

cWW-cWW-L-R-L-cWW-L-L-R

Number of instances in this motif group

2

Unit IDs

5BTP|1|B|C|15
5BTP|1|B|U|16
5BTP|1|B|G|17
5BTP|1|B|A|18
5BTP|1|B|C|19
5BTP|1|B|G|20
5BTP|1|B|G|21
5BTP|1|B|A|22
5BTP|1|B|A|23
5BTP|1|B|C|24
5BTP|1|B|G|25
*
5BTP|1|B|C|38
5BTP|1|B|A|39
5BTP|1|B|U|40
5BTP|1|B|G|41

Current chains

Chain B

RNA (62-MER)

Nearby chains

Chain A

ZMP/ZTP riboswitch