IL_5C5W_001

3D structure

PDB id

5C5W (explore in PDB, NAKB, or RNA 3D Hub)

Description

1.25 A resolution structure of an RNA 20-mer

Experimental method

X-RAY DIFFRACTION

Resolution

1.25 Å

Loop

Sequence

CCUG*CUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_35199.1

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

9

Unit IDs

5C5W|1|A|C|2
5C5W|1|A|C|3
5C5W|1|A|U|4
5C5W|1|A|G|5
*
5C5W|1|A|C|15||||5_556
5C5W|1|A|U|16||||5_556
5C5W|1|A|A|17||||5_556
5C5W|1|A|G|18||||5_556

Current chains

Chain A

RNA (5'-R(P*CP*CP*UP*GP*AP*GP*UP*UP*CP*AP*AP*UP*UP*CP*UP*AP*GP*CP*G)-3')

Nearby chains