3D structure

PDB id
5CD1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of an asymmetric tetramer of human tRNA m1A58 methyltransferase in a complex with SAH and tRNA3Lys
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
ACU*AAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5CD1_001 not in the Motif Atlas
Homologous match to IL_5CCB_001
Geometric discrepancy: 0.2731
The information below is about IL_5CCB_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

5CD1|1|M|A|31
5CD1|1|M|C|32
5CD1|1|M|U|33
*
5CD1|1|M|A|37
5CD1|1|M|A|38
5CD1|1|M|U|39

Current chains

Chain M
tRNA3Lys

Nearby chains

Chain E
tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6

Coloring options:


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