IL_5CD1_001
3D structure
- PDB id
- 5CD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of an asymmetric tetramer of human tRNA m1A58 methyltransferase in a complex with SAH and tRNA3Lys
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- ACU*AAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5CD1_001 not in the Motif Atlas
- Homologous match to IL_5CCB_001
- Geometric discrepancy: 0.2731
- The information below is about IL_5CCB_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
5CD1|1|M|A|31
5CD1|1|M|C|32
5CD1|1|M|U|33
*
5CD1|1|M|A|37
5CD1|1|M|A|38
5CD1|1|M|U|39
Current chains
- Chain M
- tRNA3Lys
Nearby chains
- Chain E
- tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
Coloring options: