IL_5CD1_003

3D structure

PDB id

5CD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an asymmetric tetramer of human tRNA m1A58 methyltransferase in a complex with SAH and tRNA3Lys

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5CD1_003 not in the Motif Atlas

Geometric match to IL_5TBW_076

Geometric discrepancy: 0.3073

The information below is about IL_5TBW_076

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

5CD1|1|N|G|0
5CD1|1|N|G|1
*
5CD1|1|N|C|72
5CD1|1|N|G|73
5CD1|1|N|C|74
5CD1|1|N|C|75

Current chains

Chain N

tRNA3Lys

Nearby chains

Chain D

tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A