IL_5CZP_037

3D structure

PDB id

5CZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5CZP|1|QA|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5CZP_037 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.0967

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5CZP|1|QA|G|933
5CZP|1|QA|C|934
5CZP|1|QA|A|935
*
5CZP|1|QA|U|1380
5CZP|1|QA|U|1381
5CZP|1|QA|C|1382
5CZP|1|QA|C|1383
5CZP|1|QA|C|1384

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9

Chain QV

Transfer RNA; tRNA