IL_5CZP_130

3D structure

PDB id

5CZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5CZP_130 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.0617

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5CZP|1|RA|U|1851
5CZP|1|RA|C|1852
5CZP|1|RA|A|1853
5CZP|1|RA|A|1854
5CZP|1|RA|G|1855
*
5CZP|1|RA|C|1887
5CZP|1|RA|G|1888
5CZP|1|RA|A|1889
5CZP|1|RA|A|1890
5CZP|1|RA|G|1891

Current chains

Chain RA

23S rRNA

Nearby chains