IL_5CZP_316

3D structure

PDB id

5CZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5CZP|1|YA|G|2116, 5CZP|1|YA|A|2117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5CZP_316 not in the Motif Atlas

Geometric match to IL_1MZP_002

Geometric discrepancy: 0.3451

The information below is about IL_1MZP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

5CZP|1|YA|G|2110
5CZP|1|YA|C|2111
5CZP|1|YA|G|2112
5CZP|1|YA|U|2113
5CZP|1|YA|A|2114
5CZP|1|YA|G|2115
5CZP|1|YA|G|2116
5CZP|1|YA|A|2117
5CZP|1|YA|U|2118
5CZP|1|YA|A|2119
5CZP|1|YA|G|2120
*
5CZP|1|YA|C|2178
5CZP|1|YA|C|2179

Current chains

Chain YA

23S rRNA

Nearby chains