IL_5D8B_005
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5D8B_005 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.0931
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5D8B|1|AD|C|71
5D8B|1|AD|G|72
5D8B|1|AD|A|73
5D8B|1|AD|U|74
5D8B|1|AD|G|75
5D8B|1|AD|G|76
5D8B|1|AD|U|77
5D8B|1|AD|A|78
5D8B|1|AD|C|79
*
5D8B|1|AD|G|97
5D8B|1|AD|G|98
5D8B|1|AD|A|99
5D8B|1|AD|G|100
5D8B|1|AD|A|101
5D8B|1|AD|G|102
5D8B|1|AD|U|103
5D8B|1|AD|A|104
5D8B|1|AD|G|105
Current chains
- Chain AD
- 5S ribosomal RNA
Nearby chains
- Chain GB
- 50S ribosomal protein L16
- Chain PB
- 50S ribosomal protein L25
- Chain ZC
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: