IL_5D8B_023

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_023 not in the Motif Atlas

Geometric match to IL_6CZR_127

Geometric discrepancy: 0.1491

The information below is about IL_6CZR_127

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.2

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

5D8B|1|UC|G|371
5D8B|1|UC|C|372
5D8B|1|UC|A|373
5D8B|1|UC|A|374
5D8B|1|UC|U|375
*
5D8B|1|UC|A|389
5D8B|1|UC|C|390

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain QA

30S ribosomal protein S16