IL_5D8B_033

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_033 not in the Motif Atlas

Homologous match to IL_5J7L_029

Geometric discrepancy: 0.1272

The information below is about IL_5J7L_029

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

5D8B|1|UC|G|597
5D8B|1|UC|U|598
*
5D8B|1|UC|A|640
5D8B|1|UC|U|641
5D8B|1|UC|A|642
5D8B|1|UC|C|643

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain IA

30S ribosomal protein S8

Chain RA

30S ribosomal protein S17