IL_5D8B_048

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GACAUGC*GCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|UC|G|993
5D8B|1|UC|A|994
5D8B|1|UC|C|995
5D8B|1|UC|A|996
5D8B|1|UC|U|997
5D8B|1|UC|G|998|||A
5D8B|1|UC|C|998|||B
*
5D8B|1|UC|G|1042
5D8B|1|UC|C|1043
5D8B|1|UC|A|1044
5D8B|1|UC|C|1045

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain OA

30S ribosomal protein S14

Chain ZC

Large subunit ribosomal RNA; LSU rRNA