IL_5D8B_072

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

5D8B|1|UC|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_072 not in the Motif Atlas

Homologous match to IL_6CZR_172

Geometric discrepancy: 0.4044

The information below is about IL_6CZR_172

Detailed Annotation

Isolated basepair with bulged bases

Broad Annotation

Isolated basepair with bulged bases

Motif group

IL_97255.3

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5D8B|1|UC|C|1440
5D8B|1|UC|G|1441
5D8B|1|UC|G|1442
5D8B|1|UC|G|1443
5D8B|1|UC|A|1446
5D8B|1|UC|G|1447
*
5D8B|1|UC|C|1459
5D8B|1|UC|A|1460
5D8B|1|UC|G|1461

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L19

Chain UA

30S ribosomal protein S20

Chain VC

Large subunit ribosomal RNA; LSU rRNA