IL_5D8B_080

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

5D8B|1|VC|C|154|||B

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_080 not in the Motif Atlas

Homologous match to HL_7RQB_005

Geometric discrepancy: 0.2327

The information below is about HL_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|VC|G|154
5D8B|1|VC|C|154|||B
5D8B|1|VC|C|155
*
5D8B|1|VC|G|171
5D8B|1|VC|C|172

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L28