IL_5D8B_111

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GAG*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_111 not in the Motif Atlas

Homologous match to IL_7RQB_034

Geometric discrepancy: 0.0862

The information below is about IL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

5D8B|1|VC|G|952
5D8B|1|VC|A|953
5D8B|1|VC|G|954
*
5D8B|1|VC|U|963
5D8B|1|VC|C|964
5D8B|1|VC|C|965

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain WC

5S ribosomal RNA; 5S rRNA