IL_5D8B_122

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

5D8B|1|VC|U|1061, 5D8B|1|VC|A|1077, 5D8B|1|VC|U|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|VC|G|1059
5D8B|1|VC|U|1060
5D8B|1|VC|U|1061
5D8B|1|VC|G|1062
*
5D8B|1|VC|C|1076
5D8B|1|VC|A|1077
5D8B|1|VC|U|1078
5D8B|1|VC|C|1079

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L11

Chain K

50S ribosomal protein L16

Chain T

50S ribosomal protein L25