IL_5D8B_133

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

5D8B|1|VC|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_133 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1468

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5D8B|1|VC|C|1417
5D8B|1|VC|G|1418
5D8B|1|VC|A|1419
5D8B|1|VC|U|1420
5D8B|1|VC|G|1421
*
5D8B|1|VC|C|1577
5D8B|1|VC|U|1578
5D8B|1|VC|A|1579
5D8B|1|VC|A|1580
5D8B|1|VC|G|1581

Current chains

Chain VC

23S ribosomal RNA

Nearby chains