IL_5D8B_142

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

5D8B|1|VC|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_142 not in the Motif Atlas

Homologous match to IL_4WF9_065

Geometric discrepancy: 0.113

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

5D8B|1|VC|A|1669
5D8B|1|VC|C|1670
5D8B|1|VC|U|1671
5D8B|1|VC|C|1672
5D8B|1|VC|U|1673
5D8B|1|VC|G|1674
*
5D8B|1|VC|C|1990
5D8B|1|VC|U|1991
5D8B|1|VC|G|1992
5D8B|1|VC|U|1993

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain I

50S ribosomal protein L14