IL_5D8B_149

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_149 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.1503

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5D8B|1|VC|U|1851
5D8B|1|VC|C|1852
5D8B|1|VC|A|1853
5D8B|1|VC|A|1854
5D8B|1|VC|G|1855
*
5D8B|1|VC|C|1887
5D8B|1|VC|G|1888
5D8B|1|VC|A|1889
5D8B|1|VC|A|1890
5D8B|1|VC|G|1891

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain XC

Transfer RNA; tRNA