IL_5D8B_161

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUG,CAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_161 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.1804

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5D8B|1|VC|G|2121
5D8B|1|VC|U|2122
5D8B|1|VC|G|2123
*
5D8B|1|VC|C|2175
5D8B|1|VC|A|2176
5D8B|1|VC|C|2177

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain XC

Transfer RNA; tRNA