IL_5D8B_173

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5D8B|1|VC|G|2576, 5D8B|1|VC|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_173 not in the Motif Atlas

Homologous match to IL_7RQB_097

Geometric discrepancy: 0.0907

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

5D8B|1|VC|C|2510
5D8B|1|VC|U|2511
5D8B|1|VC|C|2512
*
5D8B|1|VC|G|2574
5D8B|1|VC|C|2575
5D8B|1|VC|G|2576
5D8B|1|VC|A|2577
5D8B|1|VC|G|2578

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain Y

50S ribosomal protein L32