IL_5D8B_182

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CU*AUAG*G

Length

7 nucleotides

Bulged bases

5D8B|1|VC|U|2712, 5D8B|1|VC|A|2713

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_182 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.1648

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

5D8B|1|VC|C|2695
5D8B|1|VC|U|2696
*
5D8B|1|VC|A|2711
5D8B|1|VC|U|2712
5D8B|1|VC|A|2713
5D8B|1|VC|G|2714
*
5D8B|1|VC|G|2714

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L17

Chain N

50S ribosomal protein L19