IL_5D8B_183

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

5D8B|1|VC|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_183 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0892

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5D8B|1|VC|G|2737
5D8B|1|VC|A|2738
5D8B|1|VC|U|2739
5D8B|1|VC|A|2740
5D8B|1|VC|A|2741
5D8B|1|VC|C|2742
*
5D8B|1|VC|G|2762
5D8B|1|VC|G|2763
5D8B|1|VC|A|2764
5D8B|1|VC|A|2765
5D8B|1|VC|G|2766
5D8B|1|VC|C|2767

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain H

50S ribosomal protein L13