IL_5D8B_185

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGGG*CCGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_185 not in the Motif Atlas

Homologous match to IL_7RQB_109

Geometric discrepancy: 0.1318

The information below is about IL_7RQB_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58764.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

5D8B|1|VC|G|2843
5D8B|1|VC|G|2844
5D8B|1|VC|G|2845
5D8B|1|VC|G|2846
*
5D8B|1|VC|C|2870
5D8B|1|VC|C|2871
5D8B|1|VC|G|2872
5D8B|1|VC|A|2873
5D8B|1|VC|C|2874

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain L

50S ribosomal protein L17

Chain N

50S ribosomal protein L19