IL_5D8B_188
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- GGAACC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5D8B_188 not in the Motif Atlas
- Homologous match to IL_7RQB_112
- Geometric discrepancy: 0.1115
- The information below is about IL_7RQB_112
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5D8B|1|WC|G|23
5D8B|1|WC|G|24
5D8B|1|WC|A|25
5D8B|1|WC|A|26
5D8B|1|WC|C|27
5D8B|1|WC|C|28
*
5D8B|1|WC|G|56
5D8B|1|WC|A|57
5D8B|1|WC|A|58
5D8B|1|WC|A|59
5D8B|1|WC|C|60
Current chains
- Chain WC
- 5S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain M
- 50S ribosomal protein L18
Coloring options: