IL_5D8B_194

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GU*GAC

Length

5 nucleotides

Bulged bases

5D8B|1|YC|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_194 not in the Motif Atlas

Homologous match to IL_4LFB_002

Geometric discrepancy: 0.095

The information below is about IL_4LFB_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5D8B|1|YC|G|44
5D8B|1|YC|U|45
*
5D8B|1|YC|G|396
5D8B|1|YC|A|397
5D8B|1|YC|C|398

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein S4

Chain MC

30S ribosomal protein S16