IL_5D8B_212

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGGACG*CGGUACC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|YC|G|445
5D8B|1|YC|G|446
5D8B|1|YC|G|447
5D8B|1|YC|A|448
5D8B|1|YC|C|449
5D8B|1|YC|G|450
*
5D8B|1|YC|C|483
5D8B|1|YC|G|484
5D8B|1|YC|G|485
5D8B|1|YC|U|486
5D8B|1|YC|A|487
5D8B|1|YC|C|488
5D8B|1|YC|C|489

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein S4

Chain MC

30S ribosomal protein S16